Hi all,
On behalf of the SciPy development team, I'm pleased to announce the
release of SciPy 1.13.0.
Sources and binary wheels can be found at:
https://pypi.org/project/scipy/
and at: https://github.com/scipy/scipy/releases/tag/v1.13.0
One of a few ways to install this release with pip:
pip install scipy==1.13.0
==========================
SciPy 1.13.0 Release Notes
==========================
SciPy 1.13.0 is the culmination of 3 months of hard work. This
out-of-band release aims to support NumPy ``2.0.0``, and is backwards
compatible to NumPy ``1.22.4``. The version of OpenBLAS used to build
the PyPI wheels has been increased to ``0.3.26.dev``.
This release requires Python 3.9+ and NumPy 1.22.4 or greater.
For running on PyPy, PyPy3 6.0+ is required.

**************************
Highlights of this release
**************************
- Support for NumPy ``2.0.0``.
- Interactive examples have been added to the documentation, allowing users
to run the examples locally on embedded Jupyterlite notebooks in their
browser.
- Preliminary 1D array support for the COO and DOK sparse formats.
- Several `scipy.stats` functions have gained support for additional
``axis``, ``nan_policy``, and ``keepdims`` arguments. `scipy.stats` also
has several performance and accuracy improvements.
************
New features
************
`scipy.integrate` improvements
==============================
- The ``terminal`` attribute of `scipy.integrate.solve_ivp` ``events``
callables now additionally accepts integer values to specify a number
of occurrences required for termination, rather than the previous
restriction
of only accepting a ``bool`` value to terminate on the first registered
event.

`scipy.io` improvements
=======================
- `scipy.io.wavfile.write` has improved ``dtype`` input validation.

`scipy.interpolate` improvements
================================
- The Modified Akima Interpolation has been added to
``interpolate.Akima1DInterpolator``, available via the new ``method``
argument.
- New method ``BSpline.insert_knot`` inserts a knot into a ``BSpline``
instance.
This routine is similar to the module-level `scipy.interpolate.insert`
function, and works with the BSpline objects instead of ``tck`` tuples.
- ``RegularGridInterpolator`` gained the functionality to compute
derivatives
in place. For instance, ``RegularGridInterolator((x, y), values,
method="cubic")(xi, nu=(1, 1))`` evaluates the mixed second derivative,
:math:`\partial^2 / \partial x \partial y` at ``xi``.
- Performance characteristics of tensor-product spline methods of
``RegularGridInterpolator`` have been changed: evaluations should be
significantly faster, while construction might be slower. If you
experience
issues with construction times, you may need to experiment with optional
keyword arguments ``solver`` and ``solver_args``. Previous behavior (fast
construction, slow evaluations) can be obtained via `"*_legacy"` methods:
``method="cubic_legacy"`` is exactly equivalent to ``method="cubic"`` in
previous releases. See ``gh-19633`` for details.

`scipy.signal` improvements
===========================
- Many filter design functions now have improved input validation for the
sampling frequency (``fs``).

`scipy.sparse` improvements
===========================
- ``coo_array`` now supports 1D shapes, and has additional 1D support for
``min``, ``max``, ``argmin``, and ``argmax``. The DOK format now has
preliminary 1D support as well, though only supports simple integer
indices
at the time of writing.
- Experimental support has been added for ``pydata/sparse`` array inputs to
`scipy.sparse.csgraph`.
- ``dok_array`` and ``dok_matrix`` now have proper implementations of
``fromkeys``.
- ``csr`` and ``csc`` formats now have improved ``setdiag`` performance.

`scipy.spatial` improvements
============================
- ``voronoi_plot_2d`` now draws Voronoi edges to infinity more clearly
when the aspect ratio is skewed.

`scipy.special` improvements
============================
- All Fortran code, namely, ``AMOS``, ``specfun``, and ``cdflib`` libraries
that the majority of special functions depend on, is ported to Cython/C.
- The function ``factorialk`` now also supports faster, approximate
calculation using ``exact=False``.

`scipy.stats` improvements
==========================
- `scipy.stats.rankdata` and `scipy.stats.wilcoxon` have been vectorized,
improving their performance and the performance of hypothesis tests that
depend on them.
- ``stats.mannwhitneyu`` should now be faster due to a vectorized statistic
calculation, improved caching, improved exploitation of symmetry, and a
memory reduction. ``PermutationMethod`` support was also added.
- `scipy.stats.mood` now has ``nan_policy`` and ``keepdims`` support.
- `scipy.stats.brunnermunzel` now has ``axis`` and ``keepdims`` support.
- `scipy.stats.friedmanchisquare`, `scipy.stats.shapiro`,
`scipy.stats.normaltest`, `scipy.stats.skewtest`,
`scipy.stats.kurtosistest`, `scipy.stats.f_oneway`,
`scipy.stats.alexandergovern`, `scipy.stats.combine_pvalues`, and
`scipy.stats.kstest` have gained ``axis``, ``nan_policy`` and
``keepdims`` support.
- `scipy.stats.boxcox_normmax` has gained a ``ymax`` parameter to allow user
specification of the maximum value of the transformed data.
- `scipy.stats.vonmises` ``pdf`` method has been extended to support
``kappa=0``. The ``fit`` method is also more performant due to the use of
non-trivial bounds to solve for ``kappa``.
- High order ``moment`` calculations for `scipy.stats.powerlaw` are now more
accurate.
- The ``fit`` methods of `scipy.stats.gamma` (with ``method='mm'``) and
`scipy.stats.loglaplace` are faster and more reliable.
- `scipy.stats.goodness_of_fit` now supports the use of a custom
``statistic``
provided by the user.
- `scipy.stats.wilcoxon` now supports ``PermutationMethod``, enabling
calculation of accurate p-values in the presence of ties and zeros.
- `scipy.stats.monte_carlo_test` now has improved robustness in the face of
numerical noise.
- `scipy.stats.wasserstein_distance_nd` was introduced to compute the
Wasserstein-1 distance between two N-D discrete distributions.

*******************
Deprecated features
*******************
- Complex dtypes in ``PchipInterpolator`` and ``Akima1DInterpolator`` have
been deprecated and will raise an error in SciPy 1.15.0. If you are trying
to use the real components of the passed array, use ``np.real`` on ``y``.

******************************
Backwards incompatible changes
******************************
*************
Other changes
*************
- The second argument of `scipy.stats.moment` has been renamed to ``order``
while maintaining backward compatibility.

*******
Authors
*******
* Name (commits)
* h-vetinari (50)
* acceptacross (1) +
* Petteri Aimonen (1) +
* Francis Allanah (2) +
* Jonas Kock am Brink (1) +
* anupriyakkumari (12) +
* Aman Atman (2) +
* Aaditya Bansal (1) +
* Christoph Baumgarten (2)
* Sebastian Berg (4)
* Nicolas Bloyet (2) +
* Matt Borland (1)
* Jonas Bosse (1) +
* Jake Bowhay (25)
* Matthew Brett (1)
* Dietrich Brunn (7)
* Evgeni Burovski (65)
* Matthias Bussonnier (4)
* Tim Butters (1) +
* Cale (1) +
* CJ Carey (5)
* Thomas A Caswell (1)
* Sean Cheah (44) +
* Lucas Colley (97)
* com3dian (1)
* Gianluca Detommaso (1) +
* Thomas Duvernay (1)
* DWesl (2)
* f380cedric (1) +
* fancidev (13) +
* Daniel Garcia (1) +
* Lukas Geiger (3)
* Ralf Gommers (147)
* Matt Haberland (81)
* Tessa van der Heiden (2) +
* Shawn Hsu (1) +
* inky (3) +
* Jannes Münchmeyer (2) +
* Aditya Vidyadhar Kamath (2) +
* Agriya Khetarpal (1) +
* Andrew Landau (1) +
* Eric Larson (7)
* Zhen-Qi Liu (1) +
* Christian Lorentzen (2)
* Adam Lugowski (4)
* m-maggi (6) +
* Chethin Manage (1) +
* Ben Mares (1)
* Chris Markiewicz (1) +
* Mateusz Sokół (3)
* Daniel McCloy (1) +
* Melissa Weber Mendonça (6)
* Josue Melka (1)
* Michał Górny (4)
* Juan Montesinos (1) +
* Juan F. Montesinos (1) +
* Takumasa Nakamura (1)
* Andrew Nelson (27)
* Praveer Nidamaluri (1)
* Yagiz Olmez (5) +
* Dimitri Papadopoulos Orfanos (1)
* Drew Parsons (1) +
* Tirth Patel (7)
* Pearu Peterson (1)
* Matti Picus (3)
* Rambaud Pierrick (1) +
* Ilhan Polat (30)
* Quentin Barthélemy (1)
* Tyler Reddy (117)
* Pamphile Roy (10)
* Atsushi Sakai (8)
* Daniel Schmitz (10)
* Dan Schult (17)
* Eli Schwartz (4)
* Stefanie Senger (1) +
* Scott Shambaugh (2)
* Kevin Sheppard (2)
* sidsrinivasan (4) +
* Samuel St-Jean (1)
* Albert Steppi (31)
* Adam J. Stewart (4)
* Kai Striega (3)
* Ruikang Sun (1) +
* Mike Taves (1)
* Nicolas Tessore (3)
* Benedict T Thekkel (1) +
* Will Tirone (4)
* Jacob Vanderplas (2)
* Christian Veenhuis (1)
* Isaac Virshup (2)
* Ben Wallace (1) +
* Xuefeng Xu (3)
* Xiao Yuan (5)
* Irwin Zaid (8)
* Elmar Zander (1) +
* Mathias Zechmeister (1) +
A total of 96 people contributed to this release.
People with a "+" by their names contributed a patch for the first time.
This list of names is automatically generated, and may not be fully
complete.

************************
Issues closed for 1.13.0
************************
* `#1603 <https://github.com/scipy/scipy/issues/1603>`__: binomial ppf
gives bogus results for small binomial probability...
* `#2254 <https://github.com/scipy/scipy/issues/2254>`__: linalg.eig test
failure (test_singular) (Trac #1735)
* `#8398 <https://github.com/scipy/scipy/issues/8398>`__: Precision of
CDFLIB too low
* `#9950 <https://github.com/scipy/scipy/issues/9950>`__: "++"
initialization in kmeans2 fails for univariate data
* `#10317 <https://github.com/scipy/scipy/issues/10317>`__:
scipy.stats.nbinom.interval returns wrong result for p=1
* `#10569 <https://github.com/scipy/scipy/issues/10569>`__: API: \`s\`
argument different in scipy.fft and numpy.fft
* `#11359 <https://github.com/scipy/scipy/issues/11359>`__: lfilter error
when input b is 0-dim
* `#11577 <https://github.com/scipy/scipy/issues/11577>`__: generalized
eigenvalues are sometimes wrong (on some hardware)
* `#14001 <https://github.com/scipy/scipy/issues/14001>`__: Pycharm scipy
SVD returning error code without message
* `#14176 <https://github.com/scipy/scipy/issues/14176>`__: Add option for
terminating solver after n events
* `#14220 <https://github.com/scipy/scipy/issues/14220>`__: Documentation
for dctn/idctn s-parameter is confusing
* `#14450 <https://github.com/scipy/scipy/issues/14450>`__: Passing a numpy
array as sampling frequency to signal.iirfilter...
* `#14586 <https://github.com/scipy/scipy/issues/14586>`__: Problem with
freeing-up memory of matrix
* `#15039 <https://github.com/scipy/scipy/issues/15039>`__: BUG:
sparse.dok_matrix.fromkeys method totally nonfunctional
* `#15108 <https://github.com/scipy/scipy/issues/15108>`__: BUG: Seg. fault
in scipy.sparse.linalg tests in PROPACK
* `#16098 <https://github.com/scipy/scipy/issues/16098>`__: BLD:1.8.0:
SciPy is not LTO ready
* `#16792 <https://github.com/scipy/scipy/issues/16792>`__: BUG: Manually
vectorizing scipy.linalg.expm fails in version...
* `#16930 <https://github.com/scipy/scipy/issues/16930>`__: BUG:
scipy.linalg.blas.dnrm2 may return error result when incx...
* `#17004 <https://github.com/scipy/scipy/issues/17004>`__: Test failures
for \`Test_SVDS_PROPACK.test_small_sigma2\` test...
* `#17125 <https://github.com/scipy/scipy/issues/17125>`__: BUG: osx-64
scipy 1.9.1 test_bad_geneig numerical error
* `#17172 <https://github.com/scipy/scipy/issues/17172>`__: BUG:
scipy.linalg.expm, coshm, sinhm and tanhm fail for read-only...
* `#17362 <https://github.com/scipy/scipy/issues/17362>`__: Add support for
Flexiblas
* `#17436 <https://github.com/scipy/scipy/issues/17436>`__: BUG:
linalg.cholesky: segmentation fault with large matrix
* `#17530 <https://github.com/scipy/scipy/issues/17530>`__: Unnecessary
approximation in \`scipy.stats.wilcoxon(x, y)\`
* `#17681 <https://github.com/scipy/scipy/issues/17681>`__: BUG: special:
\`pbvv_seq\` is broken.
* `#18086 <https://github.com/scipy/scipy/issues/18086>`__: BUG:
\`scipy.linalg.expm\` generates inconsistent results between...
* `#18089 <https://github.com/scipy/scipy/issues/18089>`__: DOC: <Scaling
due to window not clear for spectrum and density>
* `#18166 <https://github.com/scipy/scipy/issues/18166>`__: ENH:
stats.vonmises.pdf: return 1/(2pi) when kappa=0
* `#18408 <https://github.com/scipy/scipy/issues/18408>`__: MAINT: status
of C++17 in the interregnum of meson without native...
* `#18423 <https://github.com/scipy/scipy/issues/18423>`__: ENH: Adding the
SDMN Fortran routine to the python Wrapped functions.
* `#18678 <https://github.com/scipy/scipy/issues/18678>`__: BUG:
scipy.special.stdtrit is not thread-safe for df.size > 500
* `#18722 <https://github.com/scipy/scipy/issues/18722>`__: DOC: in
optimize.quadratic_assignment 2opt method, partial_match...
* `#18767 <https://github.com/scipy/scipy/issues/18767>`__: Too-strict
version restrictions on NumPy break distribution builds
* `#18773 <https://github.com/scipy/scipy/issues/18773>`__: BUG: Update
oldest-supported-numpy metadata
* `#18902 <https://github.com/scipy/scipy/issues/18902>`__: DOC: make
default bounds in scipy.optimize.linprog more obvious
* `#19088 <https://github.com/scipy/scipy/issues/19088>`__:
\`pull-request-labeler\` misbehaving and therefore disabled again
* `#19181 <https://github.com/scipy/scipy/issues/19181>`__: TST: improve
array API test skip decorators
* `#19225 <https://github.com/scipy/scipy/issues/19225>`__: stats.t.fit()
with own optimizer (e.g. to use Nelder-Mead) fails...
* `#19486 <https://github.com/scipy/scipy/issues/19486>`__: Query: Where is
cdflib used in SciPy code?
* `#19573 <https://github.com/scipy/scipy/issues/19573>`__: scipy.fft.fht -
documentation issue
* `#19584 <https://github.com/scipy/scipy/issues/19584>`__: BUG: MATLAB
expm vs scipy.linalg.expm: overflow/invalid value...
* `#19596 <https://github.com/scipy/scipy/issues/19596>`__: BENCH:
spatial.distance.\* "non-xdist" benchmarks
* `#19605 <https://github.com/scipy/scipy/issues/19605>`__: BUG: wheel runs
have a \*lot\* of test fails at the moment.
* `#19642 <https://github.com/scipy/scipy/issues/19642>`__: Speeding up
Mann-Whitney U-Test
* `#19653 <https://github.com/scipy/scipy/issues/19653>`__: ENH: Voronoi
diagram gives unexpected results from scipy.spatial
* `#19659 <https://github.com/scipy/scipy/issues/19659>`__: BUG:
savemat(..., format="4") throws ValueError errorneously...
* `#19678 <https://github.com/scipy/scipy/issues/19678>`__: BUG:
scipy.stats.theilslopes returns invalid data when input...
* `#19683 <https://github.com/scipy/scipy/issues/19683>`__: BUG/TST:
cluster: incorrect test for \`seed\` param of {\`kmeans\`,...
* `#19729 <https://github.com/scipy/scipy/issues/19729>`__: DOC: Add
interactive examples with jupyterlite-sphinx
* `#19732 <https://github.com/scipy/scipy/issues/19732>`__: DOC: Likelihood
function depending on censoring type
* `#19733 <https://github.com/scipy/scipy/issues/19733>`__: BUG:
\`pythran\` min version not enforced
* `#19737 <https://github.com/scipy/scipy/issues/19737>`__: TST: io:
\`test_fortranfiles_mixed_record\` fails with numpy...
* `#19739 <https://github.com/scipy/scipy/issues/19739>`__: BUG: pchip
interpolation of complex values is buggy due to sign...
* `#19740 <https://github.com/scipy/scipy/issues/19740>`__: CI, MAINT: some
easy cleanups for Python version
* `#19754 <https://github.com/scipy/scipy/issues/19754>`__: MAINT, TST:
test_public_api.py can fail with NumPy main, via...
* `#19767 <https://github.com/scipy/scipy/issues/19767>`__: Build warnings
from SuperLU fixed upstream
* `#19772 <https://github.com/scipy/scipy/issues/19772>`__: DOC: stats: The
docstring for \`scipy.stats.crystalball\` needs...
* `#19774 <https://github.com/scipy/scipy/issues/19774>`__: DOC: Detail
what "concatenate" means in the context of
\`spatial.transform.Rotation.concatenate\`
* `#19799 <https://github.com/scipy/scipy/issues/19799>`__: DOC: array
types: update array validation guidance
* `#19813 <https://github.com/scipy/scipy/issues/19813>`__: BUG: typo in
specfun.f?
* `#19819 <https://github.com/scipy/scipy/issues/19819>`__: BUG: In
RBFInterpolator, wrong warning message if degree=-1
* `#19831 <https://github.com/scipy/scipy/issues/19831>`__: Test failures
with OpenBLAS 0.3.26
* `#19835 <https://github.com/scipy/scipy/issues/19835>`__: DOC: \`fft\`
missing from list of subpackages
* `#19836 <https://github.com/scipy/scipy/issues/19836>`__: DOC: remove
incorrect sentence about subpackage imports
* `#19846 <https://github.com/scipy/scipy/issues/19846>`__: CI: pre-release
Linux job isn't using NumPy pre-release anymore
* `#19848 <https://github.com/scipy/scipy/issues/19848>`__:
\`_lib._util.MapWrapper\` uses multiprocessing with \`fork\`,...
* `#19854 <https://github.com/scipy/scipy/issues/19854>`__:
scipy.special.logsumexp for complex input with return_sign=True...
* `#19862 <https://github.com/scipy/scipy/issues/19862>`__: DOC:
documentation for transpose operator for sparse matrices...
* `#19867 <https://github.com/scipy/scipy/issues/19867>`__: New ndimage and
RBFInterpolator test failures in pre-release...
* `#19896 <https://github.com/scipy/scipy/issues/19896>`__: BUG:
\`special.nctdtr\` broken in main
* `#19897 <https://github.com/scipy/scipy/issues/19897>`__: DOC:
scipy.stats.unitary_group does not specify dim>1
* `#19928 <https://github.com/scipy/scipy/issues/19928>`__: TST: special:
array types: test tol failure with \`torch\` backend
* `#19943 <https://github.com/scipy/scipy/issues/19943>`__: BUG: sparse:
CSC.setdiag is slower than converting to LIL and...
* `#19948 <https://github.com/scipy/scipy/issues/19948>`__: BUG:
scipy.sparse.linalg.gmres fails when provided x0 solves...
* `#19951 <https://github.com/scipy/scipy/issues/19951>`__: BUG: boolean
masking broken for sparse array classes
* `#19963 <https://github.com/scipy/scipy/issues/19963>`__: DOC:
scipy.optimize with large differences in parameter scales
* `#19974 <https://github.com/scipy/scipy/issues/19974>`__: DOC/REL:
retroactively add missing expired deprecations to 1.12.0...
* `#19991 <https://github.com/scipy/scipy/issues/19991>`__: BUG: Scipy
Optimize with Nelder-Mead method has issues when specifying...
* `#19993 <https://github.com/scipy/scipy/issues/19993>`__: BUG: F_INT type
conflict with f2py translation of INTEGER type...
* `#19998 <https://github.com/scipy/scipy/issues/19998>`__: DOC: Boundary
conditions in splrep
* `#20001 <https://github.com/scipy/scipy/issues/20001>`__: BUG:
scipy.stats.loglaplace may return negative moments
* `#20009 <https://github.com/scipy/scipy/issues/20009>`__: BUG:
ShortTimeFFT fails with complex input
* `#20012 <https://github.com/scipy/scipy/issues/20012>`__: MAINT: Use
NumPy sliding_window_view instead of as_strided in...
* `#20014 <https://github.com/scipy/scipy/issues/20014>`__: TST: signal:
TestCorrelateReal failing on Meson 3.12 job
* `#20027 <https://github.com/scipy/scipy/issues/20027>`__: BUG:
\`sparse.random\` returns transposed array in 1.12
* `#20031 <https://github.com/scipy/scipy/issues/20031>`__: TST: prefer
\`pytest.warns\` over \`np.testing.assert_warns\`
* `#20034 <https://github.com/scipy/scipy/issues/20034>`__: TST: linalg:
test_decomp_cossin.py::test_cossin_separate[float64]...
* `#20036 <https://github.com/scipy/scipy/issues/20036>`__: MAINT:
implement scipy.stats.powerlaw._munp
* `#20041 <https://github.com/scipy/scipy/issues/20041>`__: BUG: Using
LinearConstraint with optimize.differential_evolution
* `#20042 <https://github.com/scipy/scipy/issues/20042>`__: BUG:
scipy.stats.percentileofscore has a mistake
* `#20043 <https://github.com/scipy/scipy/issues/20043>`__: equality used
to compare floating point numbers (test_bootstrap_alternative)
* `#20060 <https://github.com/scipy/scipy/issues/20060>`__: BUG: stacking
two dok_array produces a NotImplementedError about...
* `#20062 <https://github.com/scipy/scipy/issues/20062>`__: MAINT, TST:
test failures against NumPy main
* `#20071 <https://github.com/scipy/scipy/issues/20071>`__: MAINT: doc
build warnings
* `#20075 <https://github.com/scipy/scipy/issues/20075>`__: BUG:
\`eigh_tridiagonal\` with \`select="i"\` fails for 1x1 matrices
* `#20084 <https://github.com/scipy/scipy/issues/20084>`__: BUG: \`import
scipy._lib._testutils\` raises exception in some...
* `#20100 <https://github.com/scipy/scipy/issues/20100>`__: ENH: Expose
NoConvergence error class in the scipy.optimize namespace
* `#20107 <https://github.com/scipy/scipy/issues/20107>`__: MAINT: builds
broken against NumPy main
* `#20129 <https://github.com/scipy/scipy/issues/20129>`__: BUG:
regression: eval_chebyt gives wrong results for complex...
* `#20131 <https://github.com/scipy/scipy/issues/20131>`__: DOC: linalg:
Unclear description for the output \`P\` of \`qr\`.
* `#20142 <https://github.com/scipy/scipy/issues/20142>`__: Typo in the doc
of the Kstwobign distribution
* `#20156 <https://github.com/scipy/scipy/issues/20156>`__: BUG:
sparse.dok_matrix throws KeyError for valid pop(key) since...
* `#20157 <https://github.com/scipy/scipy/issues/20157>`__: MAINT, TST:
test_svds_parameter_tol failures
* `#20161 <https://github.com/scipy/scipy/issues/20161>`__: \`dev.py test\`
fails to accept both \`--argument\` and \`--...
* `#20170 <https://github.com/scipy/scipy/issues/20170>`__: Test failures
due to \`asarray(..., copy=False)\` semantics change...
* `#20180 <https://github.com/scipy/scipy/issues/20180>`__: deprecation
warnings for Node.js 16 on GHA wheel build jobs
* `#20182 <https://github.com/scipy/scipy/issues/20182>`__: BUG:
\`csr_row_index\` and \`csr_column_index\` error for mixed...
* `#20188 <https://github.com/scipy/scipy/issues/20188>`__: BUG: Raising
scipy.spatial.transform.Rotation to power of 0 adds...
* `#20214 <https://github.com/scipy/scipy/issues/20214>`__: BUG:
minimize(method="newton-cg") crashes with UnboundLocalError...
* `#20220 <https://github.com/scipy/scipy/issues/20220>`__: new problem on
Cirrus with Homebrew Python in macOS arm64 jobs
* `#20225 <https://github.com/scipy/scipy/issues/20225>`__: CI/MAINT:
\`choco\` error for invalid credentials
* `#20230 <https://github.com/scipy/scipy/issues/20230>`__: CI, DOC, TST:
failure related to scipy/stats/_distn_infrastructure.py...
* `#20268 <https://github.com/scipy/scipy/issues/20268>`__: MAINT: failing
prerelease deps job - "numpy.broadcast size changed"
* `#20291 <https://github.com/scipy/scipy/issues/20291>`__: BUG: Macro
collision (\`complex\`) with Windows SDK in amos code
* `#20294 <https://github.com/scipy/scipy/issues/20294>`__: BUG: Hang on
Windows in scikit-learn with 1.13rc1 and 1.14.dev...
* `#20300 <https://github.com/scipy/scipy/issues/20300>`__: BUG: SciPy
1.13.0rc1 not buildable on old macOS due to pocketfft...
* `#20302 <https://github.com/scipy/scipy/issues/20302>`__: BUG:
scipy.optimize.nnls fails with exception
* `#20340 <https://github.com/scipy/scipy/issues/20340>`__: BUG:
line_search_wolfe2 fails to converge due to a wrong condition
* `#20344 <https://github.com/scipy/scipy/issues/20344>`__: MAINT/DOC:
remove outdated note about NumPy imports
************************
Pull requests for 1.13.0
************************
* `#8404 <https://github.com/scipy/scipy/pull/8404>`__: ENH:special:Tighten
cdflib precision to 1e-15
* `#14771 <https://github.com/scipy/scipy/pull/14771>`__: ENH:
integrate.solve_ivp: allow event \`terminal\` attribute...
* `#16660 <https://github.com/scipy/scipy/pull/16660>`__: DOC: update
pydata-sphinx theme
* `#17265 <https://github.com/scipy/scipy/pull/17265>`__: Doc: fix
linalg.lstsq documentation on residues
* `#17525 <https://github.com/scipy/scipy/pull/17525>`__: TST: linalg:
temporarily silence failure in test_solve_generalized_discrete_are
* `#18530 <https://github.com/scipy/scipy/pull/18530>`__: ENH: sparse:
Generalize coo_array to support 1d shapes
* `#18541 <https://github.com/scipy/scipy/pull/18541>`__: MAINT: sparse:
Stop supporting multi-Ellipsis indexing
* `#18828 <https://github.com/scipy/scipy/pull/18828>`__: ENH: improve
dtype check in wavfile.write
* `#19444 <https://github.com/scipy/scipy/pull/19444>`__: ENH: Add faster
inverse-Wishart rvs and logpdf
* `#19488 <https://github.com/scipy/scipy/pull/19488>`__: DOC: Improving
"Spectral Analysis" section in User Guide
* `#19541 <https://github.com/scipy/scipy/pull/19541>`__: BUG: fix cosine
distance result type
* `#19545 <https://github.com/scipy/scipy/pull/19545>`__: ENH:
integrate._tanhsinh: support vector-valued functions
* `#19555 <https://github.com/scipy/scipy/pull/19555>`__: DOC: Small
documentation and docstring corrections for \`ShortTimeFFT\`
* `#19560 <https://github.com/scipy/scipy/pull/19560>`__:
ENH:MAINT:special:Cythonize cdflib
* `#19587 <https://github.com/scipy/scipy/pull/19587>`__:
ENH:MAINT:special:Rewrite amos F77 code
* `#19631 <https://github.com/scipy/scipy/pull/19631>`__: ENH: add
parameter ymax in stats.boxcox_normmax
* `#19633 <https://github.com/scipy/scipy/pull/19633>`__: ENH: use
NdBSpline in RegularGridInterpolator to speed up evaluations
* `#19650 <https://github.com/scipy/scipy/pull/19650>`__: ENH:
stats.kstests: add axis / nan_policy / keepdims support
* `#19662 <https://github.com/scipy/scipy/pull/19662>`__: ENH:
stats.normaltest/skewtest/kurtosistest: add axis / nan_policy...
* `#19663 <https://github.com/scipy/scipy/pull/19663>`__: DOC: Add example
to rv_continuous.fit
* `#19664 <https://github.com/scipy/scipy/pull/19664>`__: DOC: Add example
for mstats.brunnermunzel
* `#19666 <https://github.com/scipy/scipy/pull/19666>`__: DOC: Add Example
to lbfgsb docstring
* `#19667 <https://github.com/scipy/scipy/pull/19667>`__: ENH:
integrate._nsum: function for finite and infinite summation
* `#19669 <https://github.com/scipy/scipy/pull/19669>`__: REL: set version
to 1.13.0.dev0
* `#19672 <https://github.com/scipy/scipy/pull/19672>`__: DEP: signal:
remove scipy.signal.{bspline,quadratic,cubic}
* `#19674 <https://github.com/scipy/scipy/pull/19674>`__: DEP: linalg:
remove tri{,u,l}
* `#19675 <https://github.com/scipy/scipy/pull/19675>`__: DEP: signal:
remove scipy.signal.{lsim2,impulse2,step2}
* `#19676 <https://github.com/scipy/scipy/pull/19676>`__: DEP: signal:
remove ability to import window functions from signal...
* `#19679 <https://github.com/scipy/scipy/pull/19679>`__: MAINT:
stats.theilslopes: consistent promotion of \`x\` and \`y\`
* `#19680 <https://github.com/scipy/scipy/pull/19680>`__: ENH:
stats.shapiro: add axis / nan_policy / keepdims support
* `#19681 <https://github.com/scipy/scipy/pull/19681>`__: MAINT: Add binom
to new C++ special lib along with its cephes...
* `#19682 <https://github.com/scipy/scipy/pull/19682>`__: TST: consolidate
array API test skip decorators
* `#19687 <https://github.com/scipy/scipy/pull/19687>`__: MAINT:linalg:
Remove redundant det and lu Fortran files
* `#19689 <https://github.com/scipy/scipy/pull/19689>`__: MAINT:
stats.moment: rename parameter \`moment\` to \`order\`
* `#19694 <https://github.com/scipy/scipy/pull/19694>`__: MAINT: Remove
\`PDistWeightedMetricWrapper\` and \`CDistWeightedMetricWrapper\`
* `#19695 <https://github.com/scipy/scipy/pull/19695>`__: MAINT: Prefer
\`np.fill_diagonal\` over \`diag_indices\`
* `#19696 <https://github.com/scipy/scipy/pull/19696>`__: ENH: add
\`method\` arg to \`interpolate.Akima1DInterpolator\`
* `#19698 <https://github.com/scipy/scipy/pull/19698>`__: MAINT: bump
project version
* `#19701 <https://github.com/scipy/scipy/pull/19701>`__: MAINT: make
import of \`array_api_compat\` nicer
* `#19703 <https://github.com/scipy/scipy/pull/19703>`__: DEP: non-integers
in \`factorial(..., exact=True)\`: deprecate...
* `#19708 <https://github.com/scipy/scipy/pull/19708>`__: DOC:
spatial.distance: add missing optional param markers
* `#19710 <https://github.com/scipy/scipy/pull/19710>`__: TST: fix pytest
discovery errors with editable installs
* `#19711 <https://github.com/scipy/scipy/pull/19711>`__: DOC: clarify
ttest_1samp argument
* `#19714 <https://github.com/scipy/scipy/pull/19714>`__: BLD: require
Cython >=3.0.4, drop 0.29.X support
* `#19715 <https://github.com/scipy/scipy/pull/19715>`__: ENH: sparse: Add
DOK support for 1d (without indexing)
* `#19716 <https://github.com/scipy/scipy/pull/19716>`__: ENH: enable
approximation for factorialk
* `#19721 <https://github.com/scipy/scipy/pull/19721>`__: DOC: add
rationale for 88 char line length
* `#19722 <https://github.com/scipy/scipy/pull/19722>`__: DOC: update
release version procedure
* `#19723 <https://github.com/scipy/scipy/pull/19723>`__: ENH, MAINT:
voronoi_plot_2d nicer inf lines
* `#19724 <https://github.com/scipy/scipy/pull/19724>`__: MAINT: Windows
NumPy 2.x int shims
* `#19725 <https://github.com/scipy/scipy/pull/19725>`__: MNT: use int
instead of long in cython code
* `#19728 <https://github.com/scipy/scipy/pull/19728>`__: MAINT: enhance
the configuration for the \`pull-request-labeler\`...
* `#19730 <https://github.com/scipy/scipy/pull/19730>`__: MAINT: bs4
deprecation shim
* `#19731 <https://github.com/scipy/scipy/pull/19731>`__: ENH: stats.mood:
add nan_policy / keepdims support
* `#19738 <https://github.com/scipy/scipy/pull/19738>`__: BLD: require
\`pythran>=0.14.0\`
* `#19741 <https://github.com/scipy/scipy/pull/19741>`__: ENH:
stats.friedmanchisquare/brunnermunzel: add axis / nan_policy...
* `#19742 <https://github.com/scipy/scipy/pull/19742>`__: CI: fix PR
labeler config file
* `#19743 <https://github.com/scipy/scipy/pull/19743>`__: ENH: sparse: Add
min-max 1d support and tests
* `#19744 <https://github.com/scipy/scipy/pull/19744>`__: ENH:
stats.mannwhitneyu: speed improvement, memory reduction,...
* `#19745 <https://github.com/scipy/scipy/pull/19745>`__: TST: fortranfiles
fix
* `#19746 <https://github.com/scipy/scipy/pull/19746>`__: CI: add labeler
based on issue/PR titles
* `#19749 <https://github.com/scipy/scipy/pull/19749>`__: ENH:
stats.mannwhitneyu: vectorize statistic calculation
* `#19750 <https://github.com/scipy/scipy/pull/19750>`__: DEV/BLD: generate
\`requirements/\*\` files to simplify build
* `#19752 <https://github.com/scipy/scipy/pull/19752>`__: DEP: deprecate
complex dtypes in \`PchipInterpolator\` and \`Akima1DInterpolator\`
* `#19755 <https://github.com/scipy/scipy/pull/19755>`__: MAINT/TST: ignore
backend import errors when not in array API...
* `#19757 <https://github.com/scipy/scipy/pull/19757>`__: ENH: Add
vectorized scalar minimization bracket finder
* `#19758 <https://github.com/scipy/scipy/pull/19758>`__: MAINT: correct
inaccurate comment
* `#19760 <https://github.com/scipy/scipy/pull/19760>`__: MAINT:
interpolate: remove dead code
* `#19762 <https://github.com/scipy/scipy/pull/19762>`__: ENH:
stats.monte_carlo_test: account for inexact calculation...
* `#19763 <https://github.com/scipy/scipy/pull/19763>`__: MAINT:
integrate._nsum: adjust algorithm for determining number...
* `#19768 <https://github.com/scipy/scipy/pull/19768>`__: MAINT: SuperLU
upstream fix for compile warnings
* `#19770 <https://github.com/scipy/scipy/pull/19770>`__: ENH:
stats.wilcoxon: rewrite for speed and clarity; add PermutationMethod...
* `#19773 <https://github.com/scipy/scipy/pull/19773>`__: DOC: stats: The
docstring for scipy.stats.crystalball needs an...
* `#19775 <https://github.com/scipy/scipy/pull/19775>`__: DOC: Docstring
and examples for Rotation.concatenate
* `#19776 <https://github.com/scipy/scipy/pull/19776>`__: ENH:
stats.rankdata: vectorize calculation
* `#19777 <https://github.com/scipy/scipy/pull/19777>`__: ENH: add
\`BSpline.insert_knot\` method
* `#19778 <https://github.com/scipy/scipy/pull/19778>`__: DOC, MAINT: fix
make dist in rel process
* `#19780 <https://github.com/scipy/scipy/pull/19780>`__: MAINT:
scipy.stats: replace \`_normtest_finish\`/\`_ttest_finish\`/etc......
* `#19781 <https://github.com/scipy/scipy/pull/19781>`__: CI, MAINT: switch
to stable python release
* `#19786 <https://github.com/scipy/scipy/pull/19786>`__: BLD: fix "Failed
to guess install tag" in meson-log.txt, add...
* `#19787 <https://github.com/scipy/scipy/pull/19787>`__: DOC/BLD: macOS
Homebrew OpenBlas detection advice
* `#19788 <https://github.com/scipy/scipy/pull/19788>`__: DOC:
stats.trim_mean: correct documentation
* `#19790 <https://github.com/scipy/scipy/pull/19790>`__: BENCH: Added
benchmarks for individual distance metrics
* `#19792 <https://github.com/scipy/scipy/pull/19792>`__: MAINT: simplify
\`t.logpdf\`
* `#19796 <https://github.com/scipy/scipy/pull/19796>`__: API: Enable
\`pydata/sparse\` input for csgraph module
* `#19803 <https://github.com/scipy/scipy/pull/19803>`__: TST: stats:
compare geometric zscore to naive version instead...
* `#19807 <https://github.com/scipy/scipy/pull/19807>`__: DOC: fft: add
note about FHT formulas
* `#19808 <https://github.com/scipy/scipy/pull/19808>`__: MAINT: move
elementwise algorithms and framework
* `#19810 <https://github.com/scipy/scipy/pull/19810>`__: MAINT: set
\`NPY_NO_DEPRECATED_API\` also for Cython code
* `#19811 <https://github.com/scipy/scipy/pull/19811>`__: BLD: set default
\`cpp_std\` to \`c++17\`
* `#19818 <https://github.com/scipy/scipy/pull/19818>`__: MAINT: uarray CXX
version hex cleanup
* `#19820 <https://github.com/scipy/scipy/pull/19820>`__: TST: linalg: Test
Cython LAPACK complex ladiv
* `#19821 <https://github.com/scipy/scipy/pull/19821>`__: BLD: resolve
missing prototype warnings in lsoda/vode
* `#19822 <https://github.com/scipy/scipy/pull/19822>`__: BLD: propack:
resolve missing return value warnings
* `#19823 <https://github.com/scipy/scipy/pull/19823>`__: CI/DEV: add some
new auto-labels
* `#19824 <https://github.com/scipy/scipy/pull/19824>`__: ENH:Rewrite
specfun F77 code in C
* `#19825 <https://github.com/scipy/scipy/pull/19825>`__: MAINT:
\`CODEOWNERS\` syntax fix and changes
* `#19827 <https://github.com/scipy/scipy/pull/19827>`__: MAINT: spatial:
fix build warnings in \`ckdtree\` code
* `#19828 <https://github.com/scipy/scipy/pull/19828>`__: CI/DEV: fix and
simplify \`label-globs\` syntax
* `#19829 <https://github.com/scipy/scipy/pull/19829>`__: MAINT:
interpolate: fix build warning from \`_ppoly.pyx\`
* `#19837 <https://github.com/scipy/scipy/pull/19837>`__: MAINT: special:
fix meson deprecation warning
* `#19838 <https://github.com/scipy/scipy/pull/19838>`__: DOC: fft: improve
\`s\` description for real transforms
* `#19843 <https://github.com/scipy/scipy/pull/19843>`__: DOC: Add \`fft\`
to list of submodules in tutorial
* `#19844 <https://github.com/scipy/scipy/pull/19844>`__: TST: fix more
cases of fd leaks from np.load()
* `#19849 <https://github.com/scipy/scipy/pull/19849>`__: CI: fix
prerelease job to use numpy 2.0, and add a second job...
* `#19853 <https://github.com/scipy/scipy/pull/19853>`__: ENH: sparse:
foundation for 1D arrays (add test suite, round...
* `#19855 <https://github.com/scipy/scipy/pull/19855>`__: BLD: Revamp
BLAS/LAPACK G77 ABI wrappers and fix PROPACK segfaults
* `#19856 <https://github.com/scipy/scipy/pull/19856>`__: BLD: simplify
pythran version requirement in meson
* `#19857 <https://github.com/scipy/scipy/pull/19857>`__: BLD: make scipy
build warning-free with LTO enabled
* `#19860 <https://github.com/scipy/scipy/pull/19860>`__: MAINT: fix BLD
label typo
* `#19861 <https://github.com/scipy/scipy/pull/19861>`__: BUG:io:Skip
arr_to_chars call for single code points
* `#19864 <https://github.com/scipy/scipy/pull/19864>`__: Add documentation
to explain behavior for transposing csr or...
* `#19866 <https://github.com/scipy/scipy/pull/19866>`__: DOC: Change
default for bounds in scipy.optimize.linprog
* `#19868 <https://github.com/scipy/scipy/pull/19868>`__: MAINT: fix use of
\`unique(..., return_inverse=True)\`
* `#19869 <https://github.com/scipy/scipy/pull/19869>`__: MAINT: array
types: rename \`as_xparray\` to \`_asarray\`
* `#19870 <https://github.com/scipy/scipy/pull/19870>`__: MAINT: logsumexp:
properly handle complex sign
* `#19871 <https://github.com/scipy/scipy/pull/19871>`__: MAINT: make
isinstance check in \`stats._distn_infrastructure\`...
* `#19874 <https://github.com/scipy/scipy/pull/19874>`__: rankdata: ensure
correct shape for empty inputs
* `#19876 <https://github.com/scipy/scipy/pull/19876>`__: MAINT: stats: Add
tests to ensure consistency between \`wasserstein_distance\` and different
backends of \`wasserstein_distance_nd\`
* `#19880 <https://github.com/scipy/scipy/pull/19880>`__: DOC: prepare
1.13.0 release notes
* `#19882 <https://github.com/scipy/scipy/pull/19882>`__: MAINT: vendor
\`pocketfft\` as git submodule
* `#19885 <https://github.com/scipy/scipy/pull/19885>`__: MAINT: fix some
small array API support issues
* `#19886 <https://github.com/scipy/scipy/pull/19886>`__: TST: stats: fix a
few issues with non-reproducible seeding
* `#19891 <https://github.com/scipy/scipy/pull/19891>`__: MAINT: stats: fix
editable install issue in \`qmc\` and MPL-related...
* `#19893 <https://github.com/scipy/scipy/pull/19893>`__: MAINT: remove
unused itertools-import in scipy.interpolate._interpolate
* `#19901 <https://github.com/scipy/scipy/pull/19901>`__: MAINT: special:
remove use of \`numpy.math\` from \`_cdflib.pyx\`
* `#19902 <https://github.com/scipy/scipy/pull/19902>`__:
BUG:special:cdflib: Correct cdftnc Cython bugs
* `#19908 <https://github.com/scipy/scipy/pull/19908>`__: Fix AIX build
break.
* `#19909 <https://github.com/scipy/scipy/pull/19909>`__:
MAINT:linalg:Adjust lwork/liwork changes OpenBLAS 0.3.26
* `#19916 <https://github.com/scipy/scipy/pull/19916>`__: MAINT: update
pocketfft git submodule location
* `#19917 <https://github.com/scipy/scipy/pull/19917>`__: MAINT: replicate
FITPACK's \`fpchec\` routine in python
* `#19924 <https://github.com/scipy/scipy/pull/19924>`__: TST: cluster: fix
test_kmeans_and_kmeans2_random_seed
* `#19925 <https://github.com/scipy/scipy/pull/19925>`__: MAINT: forward
port 1.12.0 relnotes
* `#19927 <https://github.com/scipy/scipy/pull/19927>`__: BUG:
cluster.kmeans\*: array types: accept \`int\`s for k
* `#19929 <https://github.com/scipy/scipy/pull/19929>`__: DOC: updated
incorrect sentence about subpackage imports. See...
* `#19931 <https://github.com/scipy/scipy/pull/19931>`__:
MAINT:special:cdflib:Refine the tolerances further
* `#19932 <https://github.com/scipy/scipy/pull/19932>`__: ENH:stats:Use
explicit formula for gamma.fit('mm')
* `#19933 <https://github.com/scipy/scipy/pull/19933>`__: BUG: Correct
handling of -inf in special stdr funcs
* `#19934 <https://github.com/scipy/scipy/pull/19934>`__: BUG:special:amos:
Fix some mistakes in the AMOS C translation
* `#19937 <https://github.com/scipy/scipy/pull/19937>`__: TST: Add RNG
seeds for TestInvgauss and TestLaplace
* `#19938 <https://github.com/scipy/scipy/pull/19938>`__: MAINT: special:
array types: fix warning when not in array API...
* `#19939 <https://github.com/scipy/scipy/pull/19939>`__: BUG:special:amos:
Fix exit path in \`amos_asyi\`
* `#19942 <https://github.com/scipy/scipy/pull/19942>`__: MAINT:
hypothesis: document minimum required version
* `#19944 <https://github.com/scipy/scipy/pull/19944>`__: BUG: Correct
handling of inf support in binomial
* `#19945 <https://github.com/scipy/scipy/pull/19945>`__: BLD: fix issue
with escape sequences in \`__config__.py\`
* `#19947 <https://github.com/scipy/scipy/pull/19947>`__: BUG:special:amos:
Fix typo in \`amos_mlri\`
* `#19950 <https://github.com/scipy/scipy/pull/19950>`__: DOC:
stats.logrank: fix typo that affect survival curves in manual
* `#19952 <https://github.com/scipy/scipy/pull/19952>`__: BUG:sparse:Add
early exit to gmres when x0 already solves problem
* `#19957 <https://github.com/scipy/scipy/pull/19957>`__: defect: sparse:
1d bool mask with wrong shape should raise IndexError
* `#19961 <https://github.com/scipy/scipy/pull/19961>`__: DOC: Add version
warning banner to documentation
* `#19962 <https://github.com/scipy/scipy/pull/19962>`__: ENH: sparse:
speedup csr/csc setdiag by converting to coo
* `#19965 <https://github.com/scipy/scipy/pull/19965>`__: DOC: scale of
parameters in optimize.curve_fit
* `#19969 <https://github.com/scipy/scipy/pull/19969>`__: DOC: Fix landing
page images for dark theme
* `#19971 <https://github.com/scipy/scipy/pull/19971>`__: ENH: Input
validation for sampling frequency in signal.filter...
* `#19975 <https://github.com/scipy/scipy/pull/19975>`__: ENH: support
custom statistic in goodness_of_fit function (gh-19894)
* `#19977 <https://github.com/scipy/scipy/pull/19977>`__: DOC: document a
common alternative parameterization of invgauss.
* `#19978 <https://github.com/scipy/scipy/pull/19978>`__: DOC: fix
autosummary for scipy.signal.ShortTimeFFT.t/T under...
* `#19980 <https://github.com/scipy/scipy/pull/19980>`__: ENH: stats: add
axis/nan_policy support to \`f_oneway\` and \`alexandergovern\`
* `#19981 <https://github.com/scipy/scipy/pull/19981>`__: TST: correct typo
in TestGamma.test_fit_mm function.
* `#19995 <https://github.com/scipy/scipy/pull/19995>`__: TST, MAINT:
test_immediate_updating fix
* `#19997 <https://github.com/scipy/scipy/pull/19997>`__: MAINT: Adjust the
codebase to the new \`np.array\`'s \`copy\`...
* `#20000 <https://github.com/scipy/scipy/pull/20000>`__: MAINT:
interpolate: address review comments on NdBSpline/RGI
* `#20003 <https://github.com/scipy/scipy/pull/20003>`__: MAINT: sparse:
change coo_matrix.indices to coo_matrix.coords
* `#20004 <https://github.com/scipy/scipy/pull/20004>`__: MAINT: sparse:
change method names _mul_\* to _matmul_\* all...
* `#20005 <https://github.com/scipy/scipy/pull/20005>`__: MAINT: Remove
partial from \`__all__\` (removed from submodule)
* `#20006 <https://github.com/scipy/scipy/pull/20006>`__: BENCH: optimize:
add timings to global optimizers benchmarks
* `#20010 <https://github.com/scipy/scipy/pull/20010>`__: BUG: Add proper
error message for \`ShortTimeFFT\` for onesided...
* `#20013 <https://github.com/scipy/scipy/pull/20013>`__: MAINT: signal:
use \`sliding_window_view\` instead of \`as_strided\`
* `#20016 <https://github.com/scipy/scipy/pull/20016>`__: DOC: update
release docs to reflect new version banner
* `#20017 <https://github.com/scipy/scipy/pull/20017>`__: BUG: loglaplace
moment should be non-negative.
* `#20018 <https://github.com/scipy/scipy/pull/20018>`__: ENH: refer to the
Laplace distribution in log-Laplace documentation.
* `#20019 <https://github.com/scipy/scipy/pull/20019>`__: DOC: Add support
for interactive examples with jupyterlite-sphinx
* `#20020 <https://github.com/scipy/scipy/pull/20020>`__: TST:
TestCorrelateReal overflow shim
* `#20021 <https://github.com/scipy/scipy/pull/20021>`__: ENH: fix
numerical instability around zero in boxcox_llf
* `#20023 <https://github.com/scipy/scipy/pull/20023>`__: ENH: use analytic
formula for log-laplace MLE when loc is known.
* `#20024 <https://github.com/scipy/scipy/pull/20024>`__: ENH:stats: Add
multivariate Wasserstein distance as a separate...
* `#20032 <https://github.com/scipy/scipy/pull/20032>`__: MAINT: Adjust
some comments in special C++ library
* `#20033 <https://github.com/scipy/scipy/pull/20033>`__: MAINT: sparse:
Un-deprecate getnnz()
* `#20037 <https://github.com/scipy/scipy/pull/20037>`__: MAINT: Add
special handling for complex infinite input in digamma
* `#20039 <https://github.com/scipy/scipy/pull/20039>`__: ENH: use
analytical formula in scipy.stats.powerlaw._munp().
* `#20044 <https://github.com/scipy/scipy/pull/20044>`__: TST:
_ConstraintWrapper returns a violation of the correct shape
* `#20045 <https://github.com/scipy/scipy/pull/20045>`__: DOC: add missing
np. in tutorial
* `#20047 <https://github.com/scipy/scipy/pull/20047>`__: TST: use
assert_allclose in test_bootstrap_alternative
* `#20052 <https://github.com/scipy/scipy/pull/20052>`__: FIX: Allow any
dtype-specifier for ndimage output
* `#20053 <https://github.com/scipy/scipy/pull/20053>`__: Add sorting
requirement for partial_match and partial_guess
* `#20054 <https://github.com/scipy/scipy/pull/20054>`__: BUG:
SciPy.interpolate.CubicSpline with periodic data
* `#20063 <https://github.com/scipy/scipy/pull/20063>`__: ENH:
optimize._differentiate: add option preserve_shape
* `#20065 <https://github.com/scipy/scipy/pull/20065>`__: MAINT Fix broken
link in \`scipy.stats._multivariate.py\`
* `#20067 <https://github.com/scipy/scipy/pull/20067>`__: TST: shims for
NumPy fft changes
* `#20068 <https://github.com/scipy/scipy/pull/20068>`__: Changed
assert_warns in stats testing to pytest.warns.
* `#20069 <https://github.com/scipy/scipy/pull/20069>`__: MAINT/DOC:
\`special.nrdtrimn/nrdtrisd\` docstring fixes
* `#20070 <https://github.com/scipy/scipy/pull/20070>`__: MAINT: silence
ruff deprecation warning
* `#20076 <https://github.com/scipy/scipy/pull/20076>`__: BUG:linalg:Add
early exit to eigh_tridiagonal for 1x1 input
* `#20078 <https://github.com/scipy/scipy/pull/20078>`__: CI: update github
actions and cibuildwheel
* `#20080 <https://github.com/scipy/scipy/pull/20080>`__: BUG: sparse: Fix
hstack, etc for dok_array
* `#20086 <https://github.com/scipy/scipy/pull/20086>`__: MAINT: detect
musl differently.
* `#20087 <https://github.com/scipy/scipy/pull/20087>`__: MAINT: switch
from \`numpy.array_api\` to \`array-api-strict\`
* `#20092 <https://github.com/scipy/scipy/pull/20092>`__: DOC: Fix a could
of places that are parsed as substitution references...
* `#20093 <https://github.com/scipy/scipy/pull/20093>`__: DOC: Fix small
typos in \`signal.rst\` and \`_short_time_fft.py\`
* `#20095 <https://github.com/scipy/scipy/pull/20095>`__: DOC: tick tensor
product splines off the roadmap
* `#20096 <https://github.com/scipy/scipy/pull/20096>`__: TST:linalg:Reduce
the size of the cossin test
* `#20098 <https://github.com/scipy/scipy/pull/20098>`__: MAINT: minor
array API skip improvements
* `#20101 <https://github.com/scipy/scipy/pull/20101>`__: MAINT: editorial
changes in the doc string of scipy.stats.vonmises.
* `#20102 <https://github.com/scipy/scipy/pull/20102>`__: ENH: use
non-trivial bounds to solve for kappa of vonmises MLE.
* `#20103 <https://github.com/scipy/scipy/pull/20103>`__: MAINT: optimize:
expose \`NoConvergence\`
* `#20104 <https://github.com/scipy/scipy/pull/20104>`__: ENH: allow shape
parameter kappa to be zero in vonmises distribution.
* `#20106 <https://github.com/scipy/scipy/pull/20106>`__: DOC: update
docstring of stats.percentileofscore
* `#20108 <https://github.com/scipy/scipy/pull/20108>`__: MAINT: shim for
descr->f access
* `#20111 <https://github.com/scipy/scipy/pull/20111>`__: DOC: clarify
accepted values for \`dim\` in \`unitary_group\`.
* `#20112 <https://github.com/scipy/scipy/pull/20112>`__: BLD: signal: do
not install Pythran source alongside the Cython...
* `#20119 <https://github.com/scipy/scipy/pull/20119>`__: Fix small issues
in docstrings
* `#20121 <https://github.com/scipy/scipy/pull/20121>`__: BLD:
simplifications in meson.build files
* `#20122 <https://github.com/scipy/scipy/pull/20122>`__: MAINT: update
Boost.Math to 1.83.0
* `#20123 <https://github.com/scipy/scipy/pull/20123>`__: MAINT: stats: fix
test failure in \`kendalltau_seasonal\`
* `#20130 <https://github.com/scipy/scipy/pull/20130>`__: BUG: Use Cython
implementation of complex hyp2f1 in orthogonal_eval.pxd
* `#20135 <https://github.com/scipy/scipy/pull/20135>`__: MAINT:
interpolate: define \`F_INT\` as \`int\` rather than \`npy_int32\`
* `#20138 <https://github.com/scipy/scipy/pull/20138>`__: TST: optimize:
silence the output from calling cobyla with disp=True
* `#20141 <https://github.com/scipy/scipy/pull/20141>`__: MAINT/CI:
special/array types: test alternative backends in CI
* `#20143 <https://github.com/scipy/scipy/pull/20143>`__: DOC: stats: Fix
typo in the doc of the Kstwobign distribution
* `#20144 <https://github.com/scipy/scipy/pull/20144>`__: MAINT, ENH:
Hausdorff simplification
* `#20145 <https://github.com/scipy/scipy/pull/20145>`__: TST: special:
bump tolerances for new \`cdftnc\` regression tests
* `#20146 <https://github.com/scipy/scipy/pull/20146>`__: MAINT: fix
incorrect \`noexcept\` usage in Cython functions
* `#20149 <https://github.com/scipy/scipy/pull/20149>`__: BLD: Ensure
Python.h is included before system headers.
* `#20153 <https://github.com/scipy/scipy/pull/20153>`__: BLD: interpolate:
_interpnd_info does not need installing
* `#20154 <https://github.com/scipy/scipy/pull/20154>`__: ENH: sparse:
implement fromkeys for _dok_base
* `#20163 <https://github.com/scipy/scipy/pull/20163>`__: MAINT: dev.py:
allow --args after --
* `#20168 <https://github.com/scipy/scipy/pull/20168>`__: BUG: optimize:
Fix constraint condition in inner loop of nnls
* `#20172 <https://github.com/scipy/scipy/pull/20172>`__: MAINT:
(additional) array copy semantics shims
* `#20173 <https://github.com/scipy/scipy/pull/20173>`__: TST:special:Add
partial tests for nrdtrimn and nrdtrisd
* `#20174 <https://github.com/scipy/scipy/pull/20174>`__: DOC: interpolate:
\`splrep\` default boundary condition
* `#20175 <https://github.com/scipy/scipy/pull/20175>`__: MAINT: sparse:
add missing dict methods to DOK and tests
* `#20176 <https://github.com/scipy/scipy/pull/20176>`__: MAINT:
vulture/ruff fixups
* `#20181 <https://github.com/scipy/scipy/pull/20181>`__: MAINT: Avoid
\`descr->elsize\` and use intp for it.
* `#20183 <https://github.com/scipy/scipy/pull/20183>`__: BUG: Fix fancy
indexing on compressed sparse arrays with mixed...
* `#20184 <https://github.com/scipy/scipy/pull/20184>`__: DOC, DX: Remove
version warning banner in latest version
* `#20186 <https://github.com/scipy/scipy/pull/20186>`__: MAINT: update
action. Closes #20180
* `#20191 <https://github.com/scipy/scipy/pull/20191>`__: BUG: Fix shape of
single Rotation raised to the 0 or 1 power
* `#20193 <https://github.com/scipy/scipy/pull/20193>`__: MAINT: Bump
\`npy2_compat.h\` and add temporary pybind11 workaround
* `#20195 <https://github.com/scipy/scipy/pull/20195>`__: ENH: linalg:
allow readonly arrays in expm et al
* `#20197 <https://github.com/scipy/scipy/pull/20197>`__: TST: linalg: fix
complex sort in test_bad_geneig
* `#20198 <https://github.com/scipy/scipy/pull/20198>`__: BLD: update
minimum Cython version to 3.0.8
* `#20203 <https://github.com/scipy/scipy/pull/20203>`__: TST: linalg: undo
xfail TestEig::test_singular
* `#20204 <https://github.com/scipy/scipy/pull/20204>`__: TST: linalg: add
a regression test for a gen eig problem
* `#20205 <https://github.com/scipy/scipy/pull/20205>`__: BUG: Fixed
\`fftshift()\` in \`ShortTimeFFT\`.
* `#20206 <https://github.com/scipy/scipy/pull/20206>`__: DOC: clarify role
of p in linalg.qr.
* `#20209 <https://github.com/scipy/scipy/pull/20209>`__: CI: move regular
macosx_arm64 from cirrus to GHA
* `#20210 <https://github.com/scipy/scipy/pull/20210>`__: BLD: macosx_arm64
wheel build on GHA instead of cirrus
* `#20212 <https://github.com/scipy/scipy/pull/20212>`__: BUG:
linalg/sqrtm: more robust check for real->complex Schur...
* `#20215 <https://github.com/scipy/scipy/pull/20215>`__: MAINT: bump
OpenBLAS "the old way"
* `#20217 <https://github.com/scipy/scipy/pull/20217>`__: DOC/MAINT: add
examples for nctdtridf, nctdtrinc, nctdtrit
* `#20218 <https://github.com/scipy/scipy/pull/20218>`__: TST: mark
linalg.sqrtm test as xfail
* `#20221 <https://github.com/scipy/scipy/pull/20221>`__: TST: Tweak tols
and ignore warnings for more reliable SVD tests
* `#20222 <https://github.com/scipy/scipy/pull/20222>`__: DOC add
likelihood formula to stats.CensoredData
* `#20224 <https://github.com/scipy/scipy/pull/20224>`__: BUG: fix
\`cluster.vq.kmeans2\` with minit='++' for 1D data
* `#20227 <https://github.com/scipy/scipy/pull/20227>`__: MAINT: remove
repeated "the" typos
* `#20229 <https://github.com/scipy/scipy/pull/20229>`__: BUG: linalg: fix
int overflow in Cholesky (potrf)
* `#20231 <https://github.com/scipy/scipy/pull/20231>`__: DOC/DX: array
types: update \`_asarray\` description
* `#20232 <https://github.com/scipy/scipy/pull/20232>`__: BLD: Refactor
BLAS/LAPACK wrapper infrastructure
* `#20233 <https://github.com/scipy/scipy/pull/20233>`__: DOC:
stats.rv_continuous.fit: fix backslashes
* `#20235 <https://github.com/scipy/scipy/pull/20235>`__: DOC: add
reference for ARGUS distribution in scipy.stats
* `#20236 <https://github.com/scipy/scipy/pull/20236>`__: DOC: fix small
typo in array API docs
* `#20237 <https://github.com/scipy/scipy/pull/20237>`__: MAINT: optimize:
update \`_direct\` for typos
* `#20238 <https://github.com/scipy/scipy/pull/20238>`__: MAINT: revert
ARPACK changes from #20227
* `#20241 <https://github.com/scipy/scipy/pull/20241>`__: BLD: remove use
of \`NPY_VISIBILITY_HIDDEN\`
* `#20243 <https://github.com/scipy/scipy/pull/20243>`__: MAINT: Specfun
translation into C++
* `#20245 <https://github.com/scipy/scipy/pull/20245>`__: MAINT: Updated
_specfun.pyx
* `#20248 <https://github.com/scipy/scipy/pull/20248>`__: MAINT: Removed
specfun_lib and updated specfun_wrappers
* `#20250 <https://github.com/scipy/scipy/pull/20250>`__: MAINT:
interpolate: const qualify cython arrays
* `#20251 <https://github.com/scipy/scipy/pull/20251>`__:
MAINT:special:Adjust inf values for cdflib
* `#20254 <https://github.com/scipy/scipy/pull/20254>`__: MAINT: linalg:
readability refactor Riccati equation solver tests
* `#20259 <https://github.com/scipy/scipy/pull/20259>`__: BUG: linalg: fix
\`expm\` for large arrays
* `#20261 <https://github.com/scipy/scipy/pull/20261>`__: BUG:linalg:Remove
the 2x2 branch in expm
* `#20263 <https://github.com/scipy/scipy/pull/20263>`__: DOC/REL: add
missing expired deprecations to 1.12.0 notes
* `#20266 <https://github.com/scipy/scipy/pull/20266>`__: MAINT:
stats.wilcoxon: pass \`PermutationMethod\` options to...
* `#20270 <https://github.com/scipy/scipy/pull/20270>`__: BLD: update
dependencies for 1.13.0 release and numpy 2.0
* `#20279 <https://github.com/scipy/scipy/pull/20279>`__: MAINT: 1.13.0rc1
prep [wheel build]
* `#20290 <https://github.com/scipy/scipy/pull/20290>`__: REL: set
1.13.0rc2 unreleased
* `#20299 <https://github.com/scipy/scipy/pull/20299>`__: BUG: Optimize:
NewtonCG min crashes with xtol=0
* `#20313 <https://github.com/scipy/scipy/pull/20313>`__: MAINT: bump
pocketfft, MacOS patch
* `#20314 <https://github.com/scipy/scipy/pull/20314>`__: BUG: sparse:
Restore random coordinate ordering to pre-1.12 results
* `#20318 <https://github.com/scipy/scipy/pull/20318>`__: BUG: signal: Fix
scalar input issue of signal.lfilter
* `#20327 <https://github.com/scipy/scipy/pull/20327>`__: DOC: mention
BSpline.insert_knot in the 1.13.0 release notes
* `#20333 <https://github.com/scipy/scipy/pull/20333>`__: BUG: sync
pocketfft again
* `#20337 <https://github.com/scipy/scipy/pull/20337>`__: MAINT: spatial:
use cython_lapack in spatial/_qhull.pyx
* `#20341 <https://github.com/scipy/scipy/pull/20341>`__: BUG: linalg:
raise an error in dnrm2(..., incx<0)
* `#20345 <https://github.com/scipy/scipy/pull/20345>`__: BUG: nelder-mead
fix degenerate simplex
* `#20347 <https://github.com/scipy/scipy/pull/20347>`__: BLD: require
pybind11 >=2.12.0 for numpy 2.0 compatibility
* `#20349 <https://github.com/scipy/scipy/pull/20349>`__: Do not segfault
in svd(a) with VT.size > INT_MAX
* `#20350 <https://github.com/scipy/scipy/pull/20350>`__: BUG: optimize:
Fix wrong condition to check invalid optimization...
* `#20353 <https://github.com/scipy/scipy/pull/20353>`__: DOC: remove
outdated NumPy imports note
* `#20359 <https://github.com/scipy/scipy/pull/20359>`__: ENH: Converting
amos to std::complex
* `#20361 <https://github.com/scipy/scipy/pull/20361>`__: ENH: Rest of amos
translation
* `#20362 <https://github.com/scipy/scipy/pull/20362>`__: MAINT, BUG: bump
OpenBLAS
* `#20364 <https://github.com/scipy/scipy/pull/20364>`__: BUG: interpolate:
Fix wrong warning message if degree=-1 in \`interpolate.RBFInterpolator\`
* `#20374 <https://github.com/scipy/scipy/pull/20374>`__: MAINT: update
pybind11 and numpy build-time requirements for...
Checksums
=========
MD5
~~~
b0da9c3b45532170cd07b82f8fdf43f7 Changelog
ea6098434dbc99f299db6c4148cc35df README.txt
eaf4cecbc2d990ed8ed3d3ad822f9956
scipy-1.13.0-cp310-cp310-macosx_10_9_x86_64.whl
00f2c0707f2f495627d692a599ec206d
scipy-1.13.0-cp310-cp310-macosx_12_0_arm64.whl
b00f0219526eb24c79f66307e5ea246c
scipy-1.13.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
464e4d56d6e9a04025336b3e0d7c81d0
scipy-1.13.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
53fce4e4f9e29073d385a61f39b50f15
scipy-1.13.0-cp310-cp310-musllinux_1_1_x86_64.whl
a71cad9f14c90e8c3484df00928b2e76 scipy-1.13.0-cp310-cp310-win_amd64.whl
dda3345a46e60e1b6351dea46edc8887
scipy-1.13.0-cp311-cp311-macosx_10_9_x86_64.whl
e6be06be899b797d029ba2e305dcd282
scipy-1.13.0-cp311-cp311-macosx_12_0_arm64.whl
629fd3392a2f43e8ae365a1c86a5dd5f
scipy-1.13.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
0d9879d580ed7b290123f0c7fe6eeb6f
scipy-1.13.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
4f3dc8357d50af7a7203afe66c4a44c4
scipy-1.13.0-cp311-cp311-musllinux_1_1_x86_64.whl
c27a20910b7e50ecd098ee78aaca7b6d scipy-1.13.0-cp311-cp311-win_amd64.whl
0cdbcb45b1962bb5950490d0ddb83a18
scipy-1.13.0-cp312-cp312-macosx_10_9_x86_64.whl
213bafe99355e2b44ac7f2b59d12aad2
scipy-1.13.0-cp312-cp312-macosx_12_0_arm64.whl
ee6b4ed821129fe28bd4ef3e0a0f6d34
scipy-1.13.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
8b74b0eb2dcfc131f3c48f70866963aa
scipy-1.13.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
29a4818ff5dc9cb8243eb9e63f05eeb3
scipy-1.13.0-cp312-cp312-musllinux_1_1_x86_64.whl
6cc76fccc3fadb2f45b54750bd394c5c scipy-1.13.0-cp312-cp312-win_amd64.whl
1d5a5a1a174ba93388c4fe91d5d6e2c9
scipy-1.13.0-cp39-cp39-macosx_10_9_x86_64.whl
627c3b243079c8b59e8a7be0ec40963c
scipy-1.13.0-cp39-cp39-macosx_12_0_arm64.whl
fd42c17c7a08ac681cdd59f86de23fe4
scipy-1.13.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
20f122366a20f7c9790d087b7d9507e1
scipy-1.13.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
10211e3f0b2a95abad7deaf5ac8cbf66
scipy-1.13.0-cp39-cp39-musllinux_1_1_x86_64.whl
e5b9353e8c5bfdf1c4fe5466be8f53f4 scipy-1.13.0-cp39-cp39-win_amd64.whl
SHA256
~~~~~~
ef5597b3bb85d4fc483c9c7f2744ed856ef263a6e0c80f6d0c36b58866907435 Changelog
736b7adb39b5bc1fd698b76f70b8c8fc53a5249afaac6f9485e05b4b39ff1606 README.txt
ba419578ab343a4e0a77c0ef82f088238a93eef141b2b8017e46149776dfad4d
scipy-1.13.0-cp310-cp310-macosx_10_9_x86_64.whl
22789b56a999265431c417d462e5b7f2b487e831ca7bef5edeb56efe4c93f86e
scipy-1.13.0-cp310-cp310-macosx_12_0_arm64.whl
05f1432ba070e90d42d7fd836462c50bf98bd08bed0aa616c359eed8a04e3922
scipy-1.13.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
b8434f6f3fa49f631fae84afee424e2483289dfc30a47755b4b4e6b07b2633a4
scipy-1.13.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
dcbb9ea49b0167de4167c40eeee6e167caeef11effb0670b554d10b1e693a8b9
scipy-1.13.0-cp310-cp310-musllinux_1_1_x86_64.whl
1d2f7bb14c178f8b13ebae93f67e42b0a6b0fc50eba1cd8021c9b6e08e8fb1cd
scipy-1.13.0-cp310-cp310-win_amd64.whl
0fbcf8abaf5aa2dc8d6400566c1a727aed338b5fe880cde64907596a89d576fa
scipy-1.13.0-cp311-cp311-macosx_10_9_x86_64.whl
5e4a756355522eb60fcd61f8372ac2549073c8788f6114449b37e9e8104f15a5
scipy-1.13.0-cp311-cp311-macosx_12_0_arm64.whl
b5acd8e1dbd8dbe38d0004b1497019b2dbbc3d70691e65d69615f8a7292865d7
scipy-1.13.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
9ff7dad5d24a8045d836671e082a490848e8639cabb3dbdacb29f943a678683d
scipy-1.13.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
4dca18c3ffee287ddd3bc8f1dabaf45f5305c5afc9f8ab9cbfab855e70b2df5c
scipy-1.13.0-cp311-cp311-musllinux_1_1_x86_64.whl
a2f471de4d01200718b2b8927f7d76b5d9bde18047ea0fa8bd15c5ba3f26a1d6
scipy-1.13.0-cp311-cp311-win_amd64.whl
d0de696f589681c2802f9090fff730c218f7c51ff49bf252b6a97ec4a5d19e8b
scipy-1.13.0-cp312-cp312-macosx_10_9_x86_64.whl
b2a3ff461ec4756b7e8e42e1c681077349a038f0686132d623fa404c0bee2551
scipy-1.13.0-cp312-cp312-macosx_12_0_arm64.whl
6bf9fe63e7a4bf01d3645b13ff2aa6dea023d38993f42aaac81a18b1bda7a82a
scipy-1.13.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
1e7626dfd91cdea5714f343ce1176b6c4745155d234f1033584154f60ef1ff42
scipy-1.13.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
109d391d720fcebf2fbe008621952b08e52907cf4c8c7efc7376822151820820
scipy-1.13.0-cp312-cp312-musllinux_1_1_x86_64.whl
8930ae3ea371d6b91c203b1032b9600d69c568e537b7988a3073dfe4d4774f21
scipy-1.13.0-cp312-cp312-win_amd64.whl
5407708195cb38d70fd2d6bb04b1b9dd5c92297d86e9f9daae1576bd9e06f602
scipy-1.13.0-cp39-cp39-macosx_10_9_x86_64.whl
ac38c4c92951ac0f729c4c48c9e13eb3675d9986cc0c83943784d7390d540c78
scipy-1.13.0-cp39-cp39-macosx_12_0_arm64.whl
09c74543c4fbeb67af6ce457f6a6a28e5d3739a87f62412e4a16e46f164f0ae5
scipy-1.13.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
28e286bf9ac422d6beb559bc61312c348ca9b0f0dae0d7c5afde7f722d6ea13d
scipy-1.13.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
33fde20efc380bd23a78a4d26d59fc8704e9b5fd9b08841693eb46716ba13d86
scipy-1.13.0-cp39-cp39-musllinux_1_1_x86_64.whl
45c08bec71d3546d606989ba6e7daa6f0992918171e2a6f7fbedfa7361c2de1e
scipy-1.13.0-cp39-cp39-win_amd64.whl